Merge remote-tracking branch 'houtanb/master'

matlab/ms-sbvar/ms_irf.m

-function [options_, oo_]=ms_irf(varlist,M_, options_, oo_)
-%function ms_irf()
-% MS-SBVAR Impulse Response Function
+function [options_, oo_]=ms_irf(varlist, M_, options_, oo_)
+% function [options_, oo_]=ms_irf(varlist, M_, options_, oo_)
+% Markov-switching SBVAR: Impulse Response Function
 %
 % INPUTS
 %    varlist:     (chararray) list of selected endogenous variables

matlab/ms-sbvar/ms_mardd.m

@@ -6,6 +6,23 @@ function ms_mardd(options_)
 %
 % Tao Zha, September 1999.  Quick revisions, May 2003.  Final revision, September 2004.
 
+% Copyright (C) 2011 Dynare Team
+%
+% This file is part of Dynare.
+%
+% Dynare is free software: you can redistribute it and/or modify
+% it under the terms of the GNU General Public License as published by
+% the Free Software Foundation, either version 3 of the License, or
+% (at your option) any later version.
+%
+% Dynare is distributed in the hope that it will be useful,
+% but WITHOUT ANY WARRANTY; without even the implied warranty of
+% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+% GNU General Public License for more details.
+%
+% You should have received a copy of the GNU General Public License
+% along with Dynare.  If not, see <http://www.gnu.org/licenses/>.
+
 msstart2     % start the program in which everyhting is initialized through msstart2.m
 if ~options_.ms.indxestima
    warning(' ')

matlab/ms-sbvar/ms_sbvar_setup.m

 function ms_sbvar_setup(options_)
-%function ms_sbvar_setup()
+% function ms_sbvar_setup(options_)
 % does the general file initialization for ms sbvar
 %
 % INPUTS

matlab/ms-sbvar/ms_simulation.m

 function [options_, oo_]=ms_simulation(M_, options_, oo_)
-%function ms_simulation()
-% MS Sbvar Simulation
+% function [options_, oo_]=ms_simulation(M_, options_, oo_)
+% Markov-switching SBVAR: Simulation
 %
 % INPUTS
 %    M_:          (struct)    model structure

matlab/ms-sbvar/ms_variance_decomposition.m

 function [options_, oo_]=ms_variance_decomposition(M_, options_, oo_)
-%function ms_variance_decomposition()
-% MS-SBVAR Variance Decomposition
+% function [options_, oo_]=ms_variance_decomposition(M_, options_, oo_)
+% Markov-switching SBVAR: Variance Decomposition
 %
 % INPUTS
 %    M_:          (struct)    model structure

matlab/ms-sbvar/ms_write_markov_file.m

-function ms_write_markov_file(fname,options)
+function ms_write_markov_file(fname, options)
+% function ms_write_markov_file(fname, options)
+%
+% INPUTS
+%    fname:       (string)    name of markov file
+%    options:     (struct)    options
+%
+% OUTPUTS
+%
+% SPECIAL REQUIREMENTS
+%    none
+
+% Copyright (C) 2011 Dynare Team
+%
+% This file is part of Dynare.
+%
+% Dynare is free software: you can redistribute it and/or modify
+% it under the terms of the GNU General Public License as published by
+% the Free Software Foundation, either version 3 of the License, or
+% (at your option) any later version.
+%
+% Dynare is distributed in the hope that it will be useful,
+% but WITHOUT ANY WARRANTY; without even the implied warranty of
+% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+% GNU General Public License for more details.
+%
+% You should have received a copy of the GNU General Public License
+% along with Dynare.  If not, see <http://www.gnu.org/licenses/>.
 
     n_chains = length(options.ms.ms_chain);
     nvars = size(options.varobs,1);

matlab/ms-sbvar/ms_write_mhm_input.m

-function ms_write_mhm_input(fname,options_ms)
+function ms_write_mhm_input(fname, options_ms)
+% function ms_write_mhm_input(fname, options_ms)
+%
+% INPUTS
+%    fname:         (string)    filename
+%    options_ms:    (struct)    options
+%
+% OUTPUTS
+%    none
+%
+% SPECIAL REQUIREMENTS
+%    none
+
+% Copyright (C) 2011 Dynare Team
+%
+% This file is part of Dynare.
+%
+% Dynare is free software: you can redistribute it and/or modify
+% it under the terms of the GNU General Public License as published by
+% the Free Software Foundation, either version 3 of the License, or
+% (at your option) any later version.
+%
+% Dynare is distributed in the hope that it will be useful,
+% but WITHOUT ANY WARRANTY; without even the implied warranty of
+% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+% GNU General Public License for more details.
+%
+% You should have received a copy of the GNU General Public License
+% along with Dynare.  If not, see <http://www.gnu.org/licenses/>.
 
     fh = fopen(fname,'w');
 

matlab/ms-sbvar/msstart2.m

@@ -12,6 +12,23 @@
 %
 % February 2004
 
+% Copyright (C) 2011 Dynare Team
+%
+% This file is part of Dynare.
+%
+% Dynare is free software: you can redistribute it and/or modify
+% it under the terms of the GNU General Public License as published by
+% the Free Software Foundation, either version 3 of the License, or
+% (at your option) any later version.
+%
+% Dynare is distributed in the hope that it will be useful,
+% but WITHOUT ANY WARRANTY; without even the implied warranty of
+% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+% GNU General Public License for more details.
+%
+% You should have received a copy of the GNU General Public License
+% along with Dynare.  If not, see <http://www.gnu.org/licenses/>.
+
 % ** ONLY UNDER UNIX SYSTEM
 %path(path,'/usr2/f1taz14/mymatlab')
 

matlab/ms-sbvar/msstart_setup.m

 %function []= msstart_setup(options_)
 
+% Copyright (C) 2011 Dynare Team
+%
+% This file is part of Dynare.
+%
+% Dynare is free software: you can redistribute it and/or modify
+% it under the terms of the GNU General Public License as published by
+% the Free Software Foundation, either version 3 of the License, or
+% (at your option) any later version.
+%
+% Dynare is distributed in the hope that it will be useful,
+% but WITHOUT ANY WARRANTY; without even the implied warranty of
+% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+% GNU General Public License for more details.
+%
+% You should have received a copy of the GNU General Public License
+% along with Dynare.  If not, see <http://www.gnu.org/licenses/>.
+
 % ** ONLY UNDER UNIX SYSTEM
 %path(path,'/usr2/f1taz14/mymatlab')
 

matlab/ms-sbvar/plot_ms_forecast.m

 function plot_ms_forecast(M_,options_,forecast,title_,save_graph_formats,TeX)
-% function [] = plot_ms_forecast(forecast,names)
+% function plot_ms_forecast(M_,options_,forecast,title_,save_graph_formats,TeX)
 % plots the forecast from the output from a ms-sbvar
 %
 % INPUTS

matlab/ms-sbvar/plot_ms_irf.m

 function plot_ms_irf(M_, options_, irf, names, title_, varlist)
-% function [] = plot_ms_irf(irf,names)
+% function plot_ms_irf(M_, options_, irf, names, title_, varlist)
 % plots the impulse responses from the output from a ms-sbvar
 %
 % INPUTS

matlab/ms-sbvar/plot_ms_probabilities.m

 function plot_ms_probabilities(computed_probabilities, options_)
-% function plot_ms_probabilities(computed_probabilities)
+% function plot_ms_probabilities(computed_probabilities, options_)
 % Plots the regime probablities for each graph
 %
 % INPUTS

matlab/ms-sbvar/plot_ms_variance_decomposition.m

-function plot_ms_variance_decomposition(M_, options_, vd, title_, graph_save_formats, ...
-                                        TeX, varargin)
+function plot_ms_variance_decomposition(M_, options_, vd, title_, graph_save_formats, TeX, varargin)
+% function plot_ms_variance_decomposition(M_, options_, vd, title_, graph_save_formats, TeX, varargin)
 % plot the variance decomposition of shocks
 %
 % Inputs

matlab/ms-sbvar/set_file_tags.m

 function [options_]=set_file_tags(options_)
-%function set_file_tags()
+% function [options_]=set_file_tags(options_)
 % Sets the appropriate file tags for first type of mex function
 %
 % INPUTS

matlab/ms-sbvar/set_ms_estimation_file.m

 function [options_, oo_]=set_ms_estimation_file(file_tag, options_, oo_)
-%function set_ms_estimation_file()
+% function [options_, oo_]=set_ms_estimation_file(file_tag, options_, oo_)
 % Set options_.ms.free_param_file based on user input
 %
 % INPUTS

matlab/ms-sbvar/set_ms_simulation_file.m

 function options_=set_ms_simulation_file(options_)
-%function set_ms_simulation_file()
+% function options_=set_ms_simulation_file(options_)
 % Set options_.ms.mh_file based on user input
 %
 % INPUTS

preprocessor/DynareBison.yy

@@ -161,7 +161,7 @@ class ParsingDriver;
 %token SELECTED_VARIABLES_ONLY COVA_COMPUTE SIMULATION_FILE_TAG FILE_TAG
 %token NO_ERROR_BANDS ERROR_BAND_PERCENTILES SHOCKS_PER_PARAMETER NO_CREATE_INIT
 %token SHOCK_DRAWS FREE_PARAMETERS MEDIAN DATA_OBS_NBR NEIGHBORHOOD_WIDTH PVALUE_KS PVALUE_CORR
-%token FILTERED_PROBABILITIES FILTERED REAL_TIME_SMOOTHED
+%token FILTERED_PROBABILITIES REAL_TIME_SMOOTHED
 %token PROPOSAL_TYPE PROPOSAL_UPPER_BOUND PROPOSAL_LOWER_BOUND PROPOSAL_DRAWS USE_MEAN_CENTER
 %token ADAPTIVE_MH_DRAWS THINNING_FACTOR COEFFICIENTS_PRIOR_HYPERPARAMETERS
 %token CONVERGENCE_STARTING_VALUE CONVERGENCE_ENDING_VALUE CONVERGENCE_INCREMENT_VALUE

preprocessor/DynareFlex.ll

@@ -326,7 +326,6 @@ string eofbuff;
 <DYNARE_STATEMENT>file_tag {return token::FILE_TAG;};
 <DYNARE_STATEMENT>no_create_init {return token::NO_CREATE_INIT;};
 <DYNARE_STATEMENT>simulation_file_tag {return token::SIMULATION_FILE_TAG;};
-<DYNARE_STATEMENT>filtered {return token::FILTERED;}
 <DYNARE_STATEMENT>horizon {return token::HORIZON;}
 <DYNARE_STATEMENT>no_error_bands {return token::NO_ERROR_BANDS;}
 <DYNARE_STATEMENT>error_band_percentiles {return token::ERROR_BAND_PERCENTILES;}