further fixes to gsa testsuite; make gsa compatible with Linux

matlab/PosteriorIRF_core1.m

@@ -87,9 +87,9 @@ if strcmpi(type,'posterior')
     MhDirectoryName = CheckPath('metropolis');
 elseif strcmpi(type,'gsa')
     if options_.opt_gsa.pprior
-        MhDirectoryName = CheckPath(['GSA' filesep 'prior']);
+        MhDirectoryName = CheckPath(['gsa' filesep 'prior']);
     else
-        MhDirectoryName = CheckPath(['GSA' filesep 'mc']);
+        MhDirectoryName = CheckPath(['gsa' filesep 'mc']);
     end
 else
     MhDirectoryName = CheckPath('prior');

matlab/ReshapeMatFiles.m

@@ -51,13 +51,13 @@ else
         MhDirectoryName = [CheckPath('metropolis') filesep ];
     elseif strcmpi(type2,'gsa')
         if options_.opt_gsa.morris==1,
-            MhDirectoryName = [CheckPath('GSA\SCREEN') filesep ];
+            MhDirectoryName = [CheckPath('gsa/screen') filesep ];
         elseif options_.opt_gsa.morris==2,
-            MhDirectoryName = [CheckPath('GSA\IDENTIF') filesep ];
+            MhDirectoryName = [CheckPath('gsa/identif') filesep ];
         elseif options_.opt_gsa.pprior
-            MhDirectoryName = [CheckPath(['GSA' filesep 'prior']) filesep ];
+            MhDirectoryName = [CheckPath(['gsa' filesep 'prior']) filesep ];
         else
-            MhDirectoryName = [CheckPath(['GSA' filesep 'mc']) filesep ];
+            MhDirectoryName = [CheckPath(['gsa' filesep 'mc']) filesep ];
         end
     else
         MhDirectoryName = [CheckPath('prior') filesep ];

matlab/dynare_identification.m

@@ -61,7 +61,7 @@ options_ident = set_default_option(options_ident,'advanced',0);
 options_ident = set_default_option(options_ident,'normalize_jacobians',1);
 options_ident = set_default_option(options_ident,'lik_init',1);
 if options_ident.gsa_sample_file,
-    GSAFolder = checkpath('GSA');
+    GSAFolder = checkpath('gsa');
     if options_ident.gsa_sample_file==1,
         load([GSAFolder,filesep,fname_,'_prior'],'lpmat','lpmat0','istable');
     elseif options_ident.gsa_sample_file==2,

matlab/dynare_sensitivity.m

@@ -136,12 +136,12 @@ if options_gsa.morris==1 || options_gsa.morris==3,
     options_gsa.ksstat=1;
     if options_gsa.morris==3,
         options_gsa = set_default_option(options_gsa,'Nsam',256);
-        OutputDirectoryName = CheckPath('GSA/IDENTIF');
+        OutputDirectoryName = CheckPath('gsa/identif');
     else
-        OutputDirectoryName = CheckPath('GSA/SCREEN');
+        OutputDirectoryName = CheckPath('gsa/screen');
     end
 else
-    OutputDirectoryName = CheckPath('GSA');
+    OutputDirectoryName = CheckPath('gsa');
 end
 
 options_.opt_gsa = options_gsa;

matlab/gsa/filt_mc_.m

@@ -97,10 +97,10 @@ if options_.opt_gsa.ppost,
 else
     if options_.opt_gsa.pprior
         fnamtmp=[fname_,'_prior'];
-        DirectoryName = CheckPath(['GSA' filesep 'prior']);
+        DirectoryName = CheckPath(['gsa' filesep 'prior']);
     else
         fnamtmp=[fname_,'_mc'];
-        DirectoryName = CheckPath(['GSA' filesep 'mc']);
+        DirectoryName = CheckPath(['gsa' filesep 'mc']);
     end
 end
 if ~loadSA,

matlab/gsa/gsa_plotmatrix.m

@@ -21,7 +21,7 @@ function gsa_plotmatrix(type,varargin)
 
 global bayestopt_ options_ M_
 
-RootDirectoryName = CheckPath('GSA');
+RootDirectoryName = CheckPath('gsa');
 
 if options_.opt_gsa.pprior
     load([ RootDirectoryName filesep  M_.fname '_prior.mat'],'lpmat0','lpmat','istable','iunstable','iindeterm','iwrong')

matlab/gsa/map_ident_.m

@@ -173,7 +173,7 @@ end
 %   yt = yt(:,j0);
 
 if opt_gsa.morris==1,
-  %OutputDir = CheckPath('GSA/SCREEN');
+  %OutputDir = CheckPath('gsa/screen');
   if ~isempty(vdec),
   if opt_gsa.load_ident_files==0,
   SAMorris = [];

matlab/prior_posterior_statistics.m

@@ -86,12 +86,12 @@ if strcmpi(type,'posterior')
         B = min(1200, round(0.25*NumberOfDraws));
     end
 elseif strcmpi(type,'gsa')
-    RootDirectoryName = CheckPath('GSA');
+    RootDirectoryName = CheckPath('gsa');
     if options_.opt_gsa.pprior
-        DirectoryName = CheckPath(['GSA',filesep,'prior']);
+        DirectoryName = CheckPath(['gsa',filesep,'prior']);
         load([ RootDirectoryName filesep  M_.fname '_prior.mat'],'lpmat0','lpmat','istable')
     else
-        DirectoryName = CheckPath(['GSA',filesep,'mc']);
+        DirectoryName = CheckPath(['gsa',filesep,'mc']);
         load([ RootDirectoryName filesep  M_.fname '_mc.mat'],'lpmat0','lpmat','istable')
     end
     x=[lpmat0(istable,:) lpmat(istable,:)];

matlab/prior_posterior_statistics_core.m

@@ -100,9 +100,9 @@ if strcmpi(type,'posterior')
     DirectoryName = CheckPath('metropolis');
 elseif strcmpi(type,'gsa')
     if options_.opt_gsa.pprior
-        DirectoryName = CheckPath(['GSA',filesep,'prior']);
+        DirectoryName = CheckPath(['gsa',filesep,'prior']);
     else
-        DirectoryName = CheckPath(['GSA',filesep,'mc']);
+        DirectoryName = CheckPath(['gsa',filesep,'mc']);
     end
 elseif strcmpi(type,'prior')
     DirectoryName = CheckPath('prior');

tests/gsa/ls2003.mod

@@ -162,8 +162,8 @@ disp('Press ENTER to continue'); pause(5);
 
 // run this to generate posterior mode and Metropolis files if not yet done
 estimation(datafile=data_ca1,first_obs=8,nobs=79,mh_nblocks=2,
-   prefilter=1,mh_jscale=0.5,mh_replic=100000, mode_compute=4, nograph, mh_drop=0.6,
-   bayesian_irf, filtered_vars, smoother);
+   prefilter=1,mh_jscale=0.5,mh_replic=5000, mode_compute=4, nograph, mh_drop=0.6,
+   bayesian_irf, filtered_vars, smoother) y_obs R_obs pie_obs dq de;
 
 
 // run this to produce posterior samples of filtered, smoothed and irf variables, if not yet done