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Closes: #216

Closes: #199

Complete the bug fix for the calibrated correlations in the structural and measurement covariance matrices.

Call   set_all_parameters  routine   in  dsge_likelihood.   Note  that
correlations between innovations are not allowed in dsge-var models.

Fixed bug reported by Johannes (http://www.dynare.org/pipermail/dev/2012-May/002015.html), see also trac#257.

estimated with a  particle filter (the non linear  smoother is not yet
implemented).

Fixed bug trac#202. Define the sigma_e_is_diagonal flag when no shocks block is declared in the mod file.