diff --git a/doc/manual/source/index.rst b/doc/manual/source/index.rst
index 08b39d226ad0f9520d7cd836e59466a6006d6875..3a454440ecde8c134a0ad59f37b38e0d95fa7c7b 100644
--- a/doc/manual/source/index.rst
+++ b/doc/manual/source/index.rst
@@ -18,7 +18,7 @@ Copyright © 1996-2019, Dynare Team.
Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.3 or any later version published by the Free Software Foundation; with no Invariant Sections, no Front-Cover Texts, and no Back-Cover Texts.
-A copy of the license can be found at `http://www.gnu.org/licenses/fdl.txt <http://www.gnu.org/licenses/fdl.txt>`_.
+A copy of the license can be found at `http://www.gnu.org/licenses/fdl.txt <http://www.gnu.org/licenses/fdl.txt>`__.
.. toctree::
:numbered:
diff --git a/doc/manual/source/installation-and-configuration.rst b/doc/manual/source/installation-and-configuration.rst
index 2d6f48a2ba253ffa39da764310388fb263a4acc2..29e8d3a3f629498e45362930ca9c04cb3f33fb2e 100644
--- a/doc/manual/source/installation-and-configuration.rst
+++ b/doc/manual/source/installation-and-configuration.rst
@@ -8,7 +8,7 @@ Software requirements
=====================
Packaged versions of Dynare are available for Windows 7/8/10,
-`Debian GNU/Linux <http://www.debian.org/>`_, `Ubuntu`_ and macOS 10.8
+`Debian GNU/Linux <http://www.debian.org/>`__, `Ubuntu`_ and macOS 10.8
or later. Dynare should work on other systems, but some compilation
steps are necessary in that case.
@@ -82,7 +82,7 @@ settings (see :ref:`words-warning`).
To install Dynare for Octave, first install Homebrew following the
instructions on their site: `https://brew.sh/
-<https://brew.sh/>`_. Then install Octave, issuing the command ``brew
+<https://brew.sh/>`__. Then install Octave, issuing the command ``brew
install octave`` at the Terminal prompt. You can then install the
latest stable version of Dynare by typing ``brew install dynare`` at
the Terminal prompt. You can also pass options to the installation
@@ -98,7 +98,7 @@ unpack it somewhere.
Then you will need to recompile the pre-processor and the dynamic
loadable libraries. Please refer to `README.md
-<https://git.dynare.org/Dynare/dynare/blob/master/README.md>`_.
+<https://git.dynare.org/Dynare/dynare/blob/master/README.md>`__.
.. _compil-install:
@@ -129,7 +129,7 @@ Prerequisites on macOS
If you are using MATLAB under macOS, you should install the latest
version of XCode: `see instructions on the Dynare wiki
-<https://git.dynare.org/Dynare/dynare/wikis/Install-on-MacOS>`_.
+<https://git.dynare.org/Dynare/dynare/wikis/Install-on-MacOS>`__.
Configuration
diff --git a/doc/manual/source/the-model-file.rst b/doc/manual/source/the-model-file.rst
index ef0ecd61449216255f982d3ee360a54fffe79364..af1c69258efdb10784ed19358a27ec1379163491 100644
--- a/doc/manual/source/the-model-file.rst
+++ b/doc/manual/source/the-model-file.rst
@@ -2167,7 +2167,7 @@ Finding the steady state with Dynare nonlinear solver
using the solver. Due to licence restrictions, you have
to download the solver’s most current version yourself
from `http://pages.cs.wisc.edu/~ferris/path.html
- <http://pages.cs.wisc.edu/~ferris/path.html>`_ and
+ <http://pages.cs.wisc.edu/~ferris/path.html>`__ and
place it in Matlab’s search path.
|br| Default value is ``4``.
@@ -3288,7 +3288,7 @@ Computing the stochastic solution
command. Note that if ``varobs`` is not present or contains all
endogenous variables, then this is the full information case
and this option has no effect. More references can be found
- `here <http://www.dynare.org/DynareWiki/PartialInformation>`_ .
+ `here <http://www.dynare.org/DynareWiki/PartialInformation>`__ .
.. option:: sylvester = OPTION
@@ -3300,7 +3300,7 @@ Computing the stochastic solution
Uses the default solver for Sylvester equations
(``gensylv``) based on Ondra Kamenik’s algorithm (see
`here
- <http://www.dynare.org/documentation-and-support/dynarepp/sylvester.pdf/at_download/file>`_
+ <http://www.dynare.org/documentation-and-support/dynarepp/sylvester.pdf/at_download/file>`__
for more information).
``fixed_point``
@@ -4286,7 +4286,7 @@ block decomposition of the model (see :opt:`block`).
The datafile: a ``.m`` file, a ``.mat`` file, a ``.csv`` file,
or a ``.xls/.xlsx`` file (under Octave, the `io
- <http://octave.sourceforge.net/io/>`_ package from Octave-Forge
+ <http://octave.sourceforge.net/io/>`__ package from Octave-Forge
is required for the ``.csv`` and ``.xlsx`` formats and the
``.xls`` file extension is not supported). Note that the base
name (i.e. without extension) of the datafile has to be
@@ -4654,7 +4654,7 @@ block decomposition of the model (see :opt:`block`).
Uses ``fminunc`` optimization routine (available under
MATLAB if the Optimization Toolbox is installed;
available under Octave if the `optim
- <http://octave.sourceforge.net/optim/>`_ package from
+ <http://octave.sourceforge.net/optim/>`__ package from
Octave-Forge is installed).
``4``
@@ -5763,7 +5763,7 @@ block decomposition of the model (see :opt:`block`).
(``dlyapchol``). This method is fast for large scale
models (available under MATLAB if the Control System
Toolbox is installed; available under Octave if the
- `control <http://octave.sourceforge.net/control/>`_
+ `control <http://octave.sourceforge.net/control/>`__
package from Octave-Forge is installed)
Default value is ``default``.
@@ -9537,7 +9537,7 @@ below.
.. command:: sbvar (OPTIONS...);
|br| To be documented. For now, see the wiki:
- `<https://www.dynare.org/DynareWiki/SbvarOptions>`_
+ `<https://www.dynare.org/DynareWiki/SbvarOptions>`__
*Options*
@@ -9602,7 +9602,7 @@ below.
RESTRICTION EQUATION INTEGER, EXPRESSION = EXPRESSION;
To be documented. For now, see the wiki:
- `<http://www.dynare.org/DynareWiki/MarkovSwitchingInterface>`_
+ `<http://www.dynare.org/DynareWiki/MarkovSwitchingInterface>`__
.. command:: ms_estimation (OPTIONS...);
@@ -11223,7 +11223,7 @@ Misc commands
.. [#f6] See :opt:`forecast <forecast = INTEGER>` for more information.
.. [#f7] In case of Excel not being installed,
- `<https://mathworks.com/matlabcentral/fileexchange/38591-xlwrite--generate-xls-x--files-without-excel-on-mac-linux-win>`_
+ `<https://mathworks.com/matlabcentral/fileexchange/38591-xlwrite--generate-xls-x--files-without-excel-on-mac-linux-win>`__
may be helpful.
.. [#f8] See option :ref:`conf_sig <confsig>` to change the size of
@@ -11237,4 +11237,4 @@ Misc commands
:math:`A^+`.
.. [#f11] An example can be found at
- `<https://git.dynare.org/Dynare/dynare/blob/master/tests/ms-dsge/test_ms_dsge.mod>`_.
+ `<https://git.dynare.org/Dynare/dynare/blob/master/tests/ms-dsge/test_ms_dsge.mod>`__.
diff --git a/doc/manual/source/time-series.rst b/doc/manual/source/time-series.rst
index b9ce74129b579306db1f7070cd813a4aa523c0a4..afcfa18e21bd35e1dfbc36cd30235abf81ac2e9b 100644
--- a/doc/manual/source/time-series.rst
+++ b/doc/manual/source/time-series.rst
@@ -803,7 +803,7 @@ The dseries class
data file specified by *FILENAME*, a string passed as
input. Valid file types are ``.m``, ``.mat``, ``.csv`` and
``.xls/.xlsx`` (Octave only supports ``.xlsx`` files and the
- `io <http://octave.sourceforge.net/io/>`_ package from
+ `io <http://octave.sourceforge.net/io/>`__ package from
Octave-Forge must be installed). A typical ``.m`` file will
have the following form::