GitLab

- fix to the case when no plot is done when there are too few behavioral/non-behavioral runs [as it already happens when one of the two sets is empty]
- added more explicit messages on screen

change dyn_figure to take a nodisplay and graph_format arguments as opposed to options_. closes #1415

Prevents overblown figures

Improves readability

Do not pass options_ structure but only the required field (prior_trunc).

1) use new mcf_analysis.m;
2) use generic filtering when threshold does not work;
3) make log-tranformed mapping meaningful and comparable to baseline;
3) harmonize names of files saved and reduced number of directories created;

 * Second  and  third  positional  arguments  after the  name  of  the
   estimated  parameter   in  the  estimated_params   block  are  only
   considered in the optimization stage (not in the MCMC)

 * Do not  store bounds  in bayestopt_, because  bounds do  not always
   reflect restrictions implied by prior shapes.

 * prior_bounds routine  returns a structure  (with fields lb  and ub)
   instead of a matrix.

2) Improve the notation of info saved of  threshold reduced form mapping which was obscure.

[to be fixed later by breaking the big matrix stored ...]

Replace them by equivalents in M_ (and an extra one: M_.dynamic).

IMPORTANT POINT: oo_.dr.npred used to count both purely backward and mixed/both
variables. This was the cause of lots of confusion. The new M_.npred only
counts purely backward variables.

We now have the following indentities:

M_.npred + M_.nboth + M_.nfwrd + M_.nstatic = M_.endo_nbr
M_.nspred = M_.npred + M_.nboth
M_.nsfwrd = M_.nfwrd + M_.nboth
M_.ndynamic = M_.npred + M_.nboth + M_.nfwrd

Proper handling of nograph option in gsa routines. Accordingly some more printed output on command window is allowed.

1) options_gsa passed as function argument
2) use pvalues always to trigger Smirnov plots and correlation plots;
3) eliminated density plots in rmse analysis;
4) updated tex documentation

Starts implementing Ticket 216. Most plotting and figure is now controlled by the functions dyn_figure and dyn_saveas, allowing for option_.nodisplay to suppress the displaying of figures and using options_.graph_format to control the format of saved figures.

Copyright Dynare Team and GFDL-1.3, with the consent of Marco Ratto

Closes: #173

git-svn-id: file:///home/sebastien/dynare/gsa_dyn@158 f1850c17-3b45-254b-b221-fcb05880fee1

2) use true values and not [0 1] values for params in plots;

git-svn-id: file:///home/sebastien/dynare/gsa_dyn@150 f1850c17-3b45-254b-b221-fcb05880fee1

git-svn-id: file:///home/sebastien/dynare/gsa_dyn@147 f1850c17-3b45-254b-b221-fcb05880fee1