diff --git a/.gitignore b/doc/manual/.gitignore
similarity index 100%
rename from .gitignore
rename to doc/manual/.gitignore
diff --git a/LICENSE.md b/doc/manual/LICENSE.md
similarity index 100%
rename from LICENSE.md
rename to doc/manual/LICENSE.md
diff --git a/Makefile b/doc/manual/Makefile
similarity index 100%
rename from Makefile
rename to doc/manual/Makefile
diff --git a/README.md b/doc/manual/README.md
similarity index 100%
rename from README.md
rename to doc/manual/README.md
diff --git a/src/Makefile b/doc/manual/src/Makefile
similarity index 100%
rename from src/Makefile
rename to doc/manual/src/Makefile
diff --git a/src/source/_static/custom.css b/doc/manual/src/source/_static/custom.css
similarity index 100%
rename from src/source/_static/custom.css
rename to doc/manual/src/source/_static/custom.css
diff --git a/src/source/_static/dlogo.svg b/doc/manual/src/source/_static/dlogo.svg
similarity index 100%
rename from src/source/_static/dlogo.svg
rename to doc/manual/src/source/_static/dlogo.svg
diff --git a/src/source/_static/mathjax b/doc/manual/src/source/_static/mathjax
similarity index 100%
rename from src/source/_static/mathjax
rename to doc/manual/src/source/_static/mathjax
diff --git a/src/source/_templates/about.html b/doc/manual/src/source/_templates/about.html
similarity index 100%
rename from src/source/_templates/about.html
rename to doc/manual/src/source/_templates/about.html
diff --git a/src/source/_templates/navigation.html b/doc/manual/src/source/_templates/navigation.html
similarity index 100%
rename from src/source/_templates/navigation.html
rename to doc/manual/src/source/_templates/navigation.html
diff --git a/src/source/bibliography.rst b/doc/manual/src/source/bibliography.rst
similarity index 100%
rename from src/source/bibliography.rst
rename to doc/manual/src/source/bibliography.rst
diff --git a/src/source/conf.py b/doc/manual/src/source/conf.py
similarity index 100%
rename from src/source/conf.py
rename to doc/manual/src/source/conf.py
diff --git a/src/source/dynare-misc-commands.rst b/doc/manual/src/source/dynare-misc-commands.rst
similarity index 100%
rename from src/source/dynare-misc-commands.rst
rename to doc/manual/src/source/dynare-misc-commands.rst
diff --git a/src/source/examples.rst b/doc/manual/src/source/examples.rst
similarity index 100%
rename from src/source/examples.rst
rename to doc/manual/src/source/examples.rst
diff --git a/src/source/index.rst b/doc/manual/src/source/index.rst
similarity index 100%
rename from src/source/index.rst
rename to doc/manual/src/source/index.rst
diff --git a/src/source/installation-and-configuration.rst b/doc/manual/src/source/installation-and-configuration.rst
similarity index 100%
rename from src/source/installation-and-configuration.rst
rename to doc/manual/src/source/installation-and-configuration.rst
diff --git a/src/source/introduction.rst b/doc/manual/src/source/introduction.rst
similarity index 100%
rename from src/source/introduction.rst
rename to doc/manual/src/source/introduction.rst
diff --git a/src/source/reporting.rst b/doc/manual/src/source/reporting.rst
similarity index 100%
rename from src/source/reporting.rst
rename to doc/manual/src/source/reporting.rst
diff --git a/src/source/running-dynare.rst b/doc/manual/src/source/running-dynare.rst
similarity index 100%
rename from src/source/running-dynare.rst
rename to doc/manual/src/source/running-dynare.rst
diff --git a/src/source/the-configuration-file.rst b/doc/manual/src/source/the-configuration-file.rst
similarity index 100%
rename from src/source/the-configuration-file.rst
rename to doc/manual/src/source/the-configuration-file.rst
diff --git a/src/source/the-model-file.rst b/doc/manual/src/source/the-model-file.rst
similarity index 100%
rename from src/source/the-model-file.rst
rename to doc/manual/src/source/the-model-file.rst
diff --git a/src/source/time-series.rst b/doc/manual/src/source/time-series.rst
similarity index 100%
rename from src/source/time-series.rst
rename to doc/manual/src/source/time-series.rst
diff --git a/utils/dynare_dom.py b/doc/manual/utils/dynare_dom.py
similarity index 100%
rename from utils/dynare_dom.py
rename to doc/manual/utils/dynare_dom.py
diff --git a/utils/dynare_lex.py b/doc/manual/utils/dynare_lex.py
similarity index 100%
rename from utils/dynare_lex.py
rename to doc/manual/utils/dynare_lex.py