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dynare

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    Sébastien Villemot's avatar
    Sébastien Villemot authored
    (cherry picked from commit 1334ae04)
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    Dynare

    Described on the homepage: https://www.dynare.org/

    Most users should use the precompiled package available for their OS, also available via the Dynare homepage: https://www.dynare.org/download/.

    Contributions

    To contribute to Dynare and participate in the Dynare community, please see: CONTRIBUTING.md

    License

    Most of the source files are covered by the GNU General Public Licence version 3 or later (there are some exceptions to this, see license.txt in Dynare distribution for specifics).

    Building Dynare From Source

    Here, we explain how to build from source:

    • Dynare, including preprocessor and MEX files for MATLAB and Octave
    • Dynare++
    • all the associated documentation (PDF and HTML)

    This source can be retrieved in three forms:

    Note that if you obtain the source code via git, you will need to install more tools (see below).

    The first section of this page gives general instructions, which apply to all platforms. Then some specific platforms are discussed.

    Note: Here, when we refer to 32-bit or 64-bit, we refer to the type of MATLAB or Octave installation, not the type of operating system installation. For example, it is perfectly possible to run a 32-bit MATLAB on a 64-bit Windows: in that case, instructions for Windows 32-bit should be followed. To determine the type of your MATLAB/Octave installation, type:

    >> computer

    at the MATLAB/Octave prompt. Under MATLAB, if it returns PCWIN64, GLNX64 or MACI64, then it is a 64-bit MATLAB; if it returns PCWIN, MACI or GLNX, then it is a 32-bit MATLAB. Under Octave, if it returns a string that begins with x86_64, it is a 64-bit Octave; if the strings begins with i686, it is a 32-bit Octave.

    Contents

    1. General Instructions
    2. Debian or Ubuntu
    3. Fedora, CentOS or RHEL
    4. Windows
    5. macOS

    General Instructions

    Prerequisites

    A number of tools and libraries are needed in order to recompile everything. You don't necessarily need to install everything, depending on what you want to compile.

    • A POSIX compliant shell and an implementation of Make (mandatory)
    • The GNU Compiler Collection, version 8 or later, with gcc, g++ and gfortran (mandatory)
    • MATLAB (if you want to compile the MEX for MATLAB)
    • GNU Octave with
      • the development headers (if you want to compile the MEX for Octave)
      • the development libraries corresponding to the UMFPACK packaged with Octave
      • Optionally, the Control, IO, Optimization and Statistics package either installed via your package manager or through Octave Forge.
    • Boost libraries, version 1.36 or later
    • Bison, version 3.2 or later (only if you get the source through Git)
    • Flex, version 2.5.4 or later (only if you get the source through Git)
    • Autoconf, version 2.62 or later (only if you get the source through Git)
    • Automake, version 1.11.2 or later (only if you get the source through Git)
    • An implementation of BLAS and LAPACK: either ATLAS, OpenBLAS, Netlib (BLAS, LAPACK) or MKL (only if you want to build Dynare++)
    • MAT File I/O library, version 1.5 or later (if you want to compile Markov-Switching code, the estimation DLL, k-order DLL and Dynare++)
    • SLICOT (if you want to compile the Kalman steady state DLL)
    • GSL library (if you want to compile Markov-Switching code)
    • A decent LaTeX distribution (if you want to compile PDF documentation), ideally with Beamer
    • For building the reference manual:
    • Doxygen (if you want to build Dynare preprocessor source documentation)
    • X-13ARIMA-SEATS Seasonal Adjustment Program

    Preparing the sources

    If you have downloaded the sources from an official source archive or the source snapshot, just unpack it.

    If you want to use Git, do the following from a terminal (note that you must have the Git LFS extension installed):

    git clone --recurse-submodules https://git.dynare.org/Dynare/dynare.git
    cd dynare
    autoreconf -si

    The last line runs Autoconf and Automake in order to prepare the build environment (this is not necessary if you got the sources from an official source archive or the source snapshot). If you want a certain version (e.g. 5.x) , then add --single-branch --branch 5.x to the git clone command.

    Configuring the build tree

    Simply launch the configure script from a terminal:

    ./configure --with-matlab=<…>

    where the path to MATLAB is specified.

    Some important options:

    • --disable-matlab: skip the compilation of MEX files for MATLAB
    • --disable-octave: skip the compilation of MEX files for Octave
    • --disable-doc: skip the compilation of the documentation (PDF and HTML)

    You may need to specify additional options to the configure script, see the output of the --help option, and also the platform specific instructions below. If the configuration goes well, the script will tell you which components are correctly configured and will be built.

    Note that it is possible that some MEX files cannot be compiled, due to missing build dependencies. If you find no way of installing the missing dependencies, a workaround can be to give up on compiling these MEX files and rather use slower implementations (in the MATLAB/Octave language) that are available under the matlab/missing/mex/ subdirectories. For example, if you fail to compile the gensylv MEX, you can type the following at the MATLAB/Octave prompt before running Dynare:

    addpath <DYNARE_ROOT>/matlab/missing/mex/gensylv

    (where you need to replace <DYNARE_ROOT> with the full path to your Dynare copy).

    Building

    Binaries are built with:

    make

    PDF and HTML documentation are respectively built with:

    make pdf
    make html

    Check

    The Git source comes with unit tests (in the MATLAB functions) and integration tests (under the tests subfolder). All the tests can be run with:

    make check

    in the tests subfolder. If Dynare has been compiled against MATLAB and Octave, the tests will be run with both MATLAB and Octave. Depending on the performance of your machine, this can take several hours. It is possible to run the tests only with MATLAB:

    make check-matlab

    or only with Octave:

    make check-octave

    Note that running the testsuite with Octave requires the additional packages pstoedit, epstool, xfig, and gnuplot.

    A summary of the results is available in tests/run_test_matlab_output.txt or tests/run_test_octave_output.txt. Often, it does not make sense to run the complete testsuite. For instance, if you modify codes only related to the perfect foresight model solver, you can decide to run only a subset of the integration tests, with:

    make deterministic_simulations

    This will run all the integration tests in tests/deterministic_simulations with MATLAB and Octave. Again, it is possible to do this only with MATLAB:

    make m/deterministic_simulations

    or with Octave:

    make o/deterministic_simulations

    Finally if you want to run a single integration test, e.g. deterministic_simulations/lbj/rbc.mod with MATLAB:

    make deterministic_simulations/lbj/rbc.m.trs

    or with Octave:

    make deterministic_simulations/lbj/rbc.o.trs

    The result of the test (PASSED or FAILED) will be printed in the terminal, the produced log can be displayed with:

    make deterministic_simulations/lbj/rbc.m.drs

    or

    make deterministic_simulations/lbj/rbc.o.drs

    Note that only tests will be executed where the m.trs/o.trs does not yet exist. You can run

    make clean

    in the tests folder to delete files that were created by the run of the testsuite. You can also manually delete the desired m.trs/o.trs file(s).

    Debian or Ubuntu

    All the prerequisites are packaged:

    • build-essential (for gcc, g++ and make)
    • gfortran
    • liboctave-dev
    • libboost-graph-dev
    • libgsl-dev
    • libmatio-dev
    • libslicot-dev and libslicot-pic
    • libsuitesparse-dev
    • flex and libfl-dev
    • bison
    • autoconf
    • automake
    • texlive
    • texlive-publishers (for Econometrica bibliographic style)
    • texlive-latex-extra (for fullpage.sty)
    • texlive-fonts-extra (for ccicons)
    • texlive-latex-recommended
    • texlive-science (for amstex)
    • texlive-plain-generic
    • lmodern (for macroprocessor PDF)
    • python3-sphinx
    • tex-gyre
    • latexmk
    • libjs-mathjax
    • doxygen
    • x13as

    You can install them all at once with:

    apt install build-essential gfortran liboctave-dev libboost-graph-dev libgsl-dev libmatio-dev libslicot-dev libslicot-pic libsuitesparse-dev flex libfl-dev bison autoconf automake texlive texlive-publishers texlive-latex-extra texlive-fonts-extra texlive-latex-recommended texlive-science texlive-plain-generic lmodern python3-sphinx tex-gyre latexmk libjs-mathjax doxygen x13as

    If you use MATLAB, we strongly advise to also apt install matlab-support and confirm to rename the GCC libraries shipped with MATLAB to avoid possible conflicts with GCC libraries shipped by your distribution.

    Tested on

    • Debian “Buster” 10
    • Debian “Bullseye” 11
    • Ubuntu 20.04
    • Ubuntu 20.10

    Fedora, CentOS or RHEL

    Almost all prerequisites are packaged:

    • gcc, gcc-c++, make
    • gcc-gfortran
    • lapack and lapack-devel
    • openblas and openblas-devel
    • boost-devel
    • gsl-devel
    • matio-devel
    • suitesparse-devel
    • flex
    • bison
    • autoconf
    • automake
    • redhat-rpm-config
    • octave, octave-devel, octave-statistics, octave-io, octave-optim, octave-control
    • texlive-scheme-minimal, texlive-collection-publishers, texlive-collection-latexextra, texlive-collection-fontsextra, texlive-collection-latexrecommended, texlive-collection-science, texlive-collection-plaingeneric, texlive-lm
    • python3-sphinx
    • latexmk
    • mathjax
    • doxygen

    You can install them all at once with:

    # Minimal packages (use --disable-doc and --disable-octave flags)
    dnf install -y gcc gcc-c++ make gcc-gfortran lapack lapack-devel openblas openblas-devel boost-devel gsl-devel matio-devel suitesparse-devel flex bison autoconf automake redhat-rpm-config
    # Octave packages (use --disable-doc flag)
    dnf install octave octave-devel octave-statistics octave-io octave-optim octave-control
    # Documentation packages
    dnf install texlive-scheme-minimal texlive-collection-publishers texlive-collection-latexextra texlive-collection-fontsextra texlive-collection-latexrecommended texlive-collection-science texlive-collection-plaingeneric texlive-lm python3-sphinx latexmk mathjax doxygen

    In Fedora these are available from the default repositories; whereas for CentOS and RHEL you need to enable the Extra Packages for Enterprise Linux (EPEL) repository and either the PowerTools repository for CentOS or the CodeReady Linux Builder repository for RHEL:

    yum install https://dl.fedoraproject.org/pub/epel/epel-release-latest-8.noarch.rpm
    # CentOS 8
    dnf config-manager --set-enabled PowerTools
    # RHEL 8
    ARCH=$( /bin/arch )
    subscription-manager repos --enable "codeready-builder-for-rhel-8-${ARCH}-rpms"

    The documentation packages have slightly different names in CentOS and RHEL, you can also choose to pass the --disable-doc flag to your configure script to skip these dependencies.

    Slicot and x13as need to be compiled from source:

    # compile slicot from source and put it into /home/$USER/dynare/slicot/lib/
    mkdir -p /home/$USER/dynare/slicot
    cd /home/$USER/dynare/slicot
    wget https://deb.debian.org/debian/pool/main/s/slicot/slicot_5.0+20101122.orig.tar.gz
    tar xf slicot_5.0+20101122.orig.tar.gz
    cd slicot-5.0+20101122
    make FORTRAN=gfortran OPTS="-O2 -fPIC -fdefault-integer-8" LOADER=gfortran lib
    mkdir -p /home/$USER/dynare/slicot/lib
    cp slicot.a /home/$USER/dynare/slicot/lib/libslicot64_pic.a #for matlab
    cp slicot.a /home/$USER/dynare/slicot/lib/libslicot_pic.a #for octave
    
    # compile x13as from source and put it into /usr/bin/
    mkdir -p /home/$USER/dynare/x13as
    cd /home/$USER/dynare/x13as
    wget https://www2.census.gov/software/x-13arima-seats/x13as/unix-linux/program-archives/x13as_asciisrc-v1-1-b60.tar.gz
    tar xf x13as_asciisrc-v1-1-b60.tar.gz
    sed -i "s|-static| |" makefile.gf # this removes '-static' in the makefile.gf
    make -f makefile.gf FFLAGS="-O2 -std=legacy" PROGRAM=x13as
    sudo cp x13as /usr/bin/

    If you use MATLAB, we strongly advise to also rename or exclude the GCC libraries shipped with MATLAB to avoid possible conflicts with GCC libraries shipped by Fedora, see e.g. Matlab on Fedora 33 or MATLAB-ArchWiki for instructions.

    Keep in mind to use the --with-slicot option to the configure command, e.g.:

    cd /home/$USER/dynare
    git clone --recurse-submodules https://git.dynare.org/dynare/dynare.git unstable
    cd unstable
    autoreconf -si
    ./configure --with-slicot=/home/$USER/dynare/slicot --with-matlab=/usr/local/MATLAB/R2023b
    make -j$(($(nproc)+1)) #rule of thumb: one more than CPUs as shown by e.g. lscpu

    If your distribution ships an older version of bison, compile it from source and append it temporarily to your path before calling the configure script:

    bison --version # bison (GNU Bison) 3.0.4
    mkdir -p /home/$USER/dynare/bison
    cd /home/$USER/dynare/bison
    wget http://ftp.gnu.org/gnu/bison/bison-3.6.4.tar.gz #change the version number accordingly
    tar xf bison-3.6.4.tar.gz
    cd bison-3.6.4
    ./configure --prefix=/home/$USER/dynare/bison
    make
    make install
    export PATH=/home/$USER/dynare/bison/bin:$PATH
    bison --version # bison (GNU Bison) 3.6.4

    Now configure dynare as above.

    Tested on

    • CentOS 8
    • Fedora Workstation 32
    • Fedora Workstation 33
    • Red Hat Enterprise Linux 8

    Windows

    • Install MSYS2
    • Run a MSYS MinGW 64-bit shell
    • Update the system:
    pacman -Syu

    You may be asked to close the window at the end of the first upgrade batch, in which case you should rerun the upgrade in a new window to complete the upgrade.

    • Install all needed dependencies:
    pacman -S git autoconf automake-wrapper bison flex make tar texinfo mingw-w64-x86_64-gcc mingw-w64-x86_64-gcc-fortran mingw-w64-x86_64-boost mingw-w64-x86_64-gsl mingw-w64-x86_64-matio mingw-w64-x86_64-openblas
    • Compile and install SLICOT, needed for the kalman_steady_state MEX file
    wget https://deb.debian.org/debian/pool/main/s/slicot/slicot_5.0+20101122.orig.tar.gz
    tar xf slicot_5.0+20101122.orig.tar.gz
    cd slicot-5.0+20101122
    make FORTRAN=gfortran OPTS="-O2 -fno-underscoring -fdefault-integer-8" LOADER=gfortran lib
    mkdir -p /usr/local/lib
    cp slicot.a /usr/local/lib/libslicot64_pic.a
    cd ..
    • Prepare the Dynare sources, either by unpacking the source tarball, or with:
    git clone --recurse-submodules https://git.dynare.org/Dynare/dynare.git
    cd dynare
    autoreconf -si
    • Configure Dynare from the source directory:
    ./configure --with-slicot=/usr/local --with-matlab=<…> --disable-octave --disable-doc

    where the path of MATLAB is specified. Note that you should use the MSYS2 notation and not put spaces in the MATLAB path, so you probably want to use something like /c/Progra~1/MATLAB/…. Alternatively, if your filesystem does not have short filenames (8dot3), then you can run mkdir -p /usr/local/MATLAB && mount c:/Program\ Files/MATLAB /usr/local/MATLAB, and then pass /usr/local/MATLAB/… as MATLAB path to the configure script.

    • Compile:
    make
    • Run the testsuite:
    make -C tests check-matlab

    Note: The above assumes that you have a 64-bit version of MATLAB. It can be adapted to a 32-bit MATLAB with the following modifications:

    • run the MSYS MinGW 32-bit shell
    • replace x86_64 by i686 in packages names on the pacman command-line
    • for SLICOT, remove the -fdefault-integer-8 option, and instead copy the library into /usr/local/lib/libslicot_pic.a

    Note: Compiling the MEX files for Octave and the documentation under MSYS2 is currently not supported.

    macOS

    Dynare supports both Intel and Apple Silicon chips and is compiled from source using a Homebrew toolchain. If you have an Apple silicon processor (M1/M2 PRO/MAX/ULTRA), you can compile Dynare both for Intel's x86_64 (using Rosetta 2) as well as Apple's native arm64 platform by using the corresponding Homebrew packages. If you have an Intel chip you can only compile for x86_64.

    You can check the platform of your current Homebrew installation by e.g. running which brew which should point to /opt/homebrew/bin/brew for arm64 and to /usr/local/bin/brew for x86_64 systems. In the steps below, we create a temporary environment variable BREWDIR to ensure that the correct packages are used.

    The following commands install all requirements and Dynare from source. They should be entered at the command prompt in Terminal.app.

    Preparatory work

    • Install the Xcode Command Line Tools:
    xcode-select --install
    • Install Rosetta 2 (Apple Silicon only):
    softwareupdate --install-rosetta --agree-to-license
    • Install Homebrew: Create environment variables for which platform you want to compile for, i.e. either arm64 or x86_64:

    For arm64 run the following commands:

    export ARCH=arm64
    export BREWDIR=/opt/homebrew

    For x86_64 run the following commands:

    export ARCH=x86_64
    export BREWDIR=/usr/local

    Install Homebrew using the environment variables:

    arch -$ARCH /bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)"

    The prefix arch -arm64 or arch -x86_64 makes sure that you are installing the correct packages. Don't forget to run the displayed commands (Next steps) in the terminal to add Homebrew to your PATH.

    If you have both Homebrew installations installed, make sure that you are accessing the correct packages by temporarily (!) prepending it to the path:

    export PATH="$BREWDIR/bin:$PATH"
    • Install required Homebrew packages:
    arch -$ARCH $BREWDIR/bin/brew install automake bison flex boost gcc gsl libmatio veclibfort octave sphinx-doc wget git-lfs

    If you are installing git-lfs for the first time, you need to run git lfs install once after installing it.

    • Link the sphinx-doc package to be able to compile the documentation:
    arch -$ARCH $BREWDIR/bin/brew link --force sphinx-doc
    • Install MacTeX using the universal installer, if you want to build the documentation. MacTeX runs natively on both ARM and Intel machines. On Apple Silicon, it is advised to symlink pdflatex, bibtex and latexmk into /usr/local/bin:
    sudo ln -s /Library/TeX/texbin/pdflatex /usr/local/bin/pdflatex
    sudo ln -s /Library/TeX/texbin/bibtex /usr/local/bin/bibtex
    sudo ln -s /Library/TeX/texbin/latexmk /usr/local/bin/latexmk

    If you don't have admin privileges, then you can also symlink them into $HOME/.local/bin and add this folder to your PATH. If you don’t want to install MacTeX, you should pass the --disable-doc flag to the configure command below.

    • Install MATLAB and additional toolboxes. We recommend, but don't require, the following: Optimization, Global Optimization, Statistics and Machine Learning, Econometrics, and Control System. For Apple Silicon: MATLAB offers a native Apple silicon version (arm64) as of version R2023b, see the official instructions how to install it. You can also run the Intel version (x86_64) under Rosetta 2. Don't forget to run MATLAB at least once to make sure you have a valid license.

    • Create a folder for Dynare and its dependencies

    export DYNAREDIR=$HOME/dynare
    • Compile and install SLICOT
    mkdir -p $DYNAREDIR/slicot/lib
    cd $DYNAREDIR/slicot
    curl -O https://deb.debian.org/debian/pool/main/s/slicot/slicot_5.0+20101122.orig.tar.gz
    tar xf slicot_5.0+20101122.orig.tar.gz
    cd slicot-5.0+20101122
    make -j$(sysctl -n hw.ncpu) FORTRAN=$BREWDIR/bin/gfortran OPTS="-O2" LOADER=gfortran lib
    cp slicot.a $DYNAREDIR/slicot/lib/libslicot_pic.a
    make clean
    make -j$(sysctl -n hw.ncpu) FORTRAN=$BREWDIR/bin/gfortran OPTS="-O2 -fdefault-integer-8" LOADER=gfortran lib
    cp slicot.a $DYNAREDIR/slicot/lib/libslicot64_pic.a
    • Compile and install the X-13ARIMA-SEATS Seasonal Adjustment Program
    mkdir -p $DYNAREDIR/x13as
    cd $DYNAREDIR/x13as
    curl -O https://www2.census.gov/software/x-13arima-seats/x13as/unix-linux/program-archives/x13as_asciisrc-v1-1-b60.tar.gz
    tar xf x13as_asciisrc-v1-1-b60.tar.gz
    sed -i '' 's/-static//g' makefile.gf
    make -j$(sysctl -n hw.ncpu) -f makefile.gf FC=$BREWDIR/bin/gfortran LINKER=$BREWDIR/bin/gcc-13 FFLAGS="-O2 -std=legacy" LDFLAGS=-static-libgcc LIBS="$BREWDIR/lib/gcc/current/libgfortran.a /$BREWDIR/lib/gcc/current/libquadmath.a" PROGRAM=x13as
    sudo cp $DYNAREDIR/x13as/x13as /usr/local/bin/x13as
    cd $DYNAREDIR
    x13as

    Alternatively, if you don't have admin privileges you can install it into $HOME/.local/bin and add this folder to your PATH.

    Compile Dynare from source

    The following commands will download the Dynare source code and compile it. They should be entered at the command prompt in Terminal.app from the folder where you want Dynare installed.

    • Prepare the Dynare sources for the unstable version:
    git clone --recurse-submodules https://git.dynare.org/Dynare/dynare.git $DYNAREDIR/unstable
    cd $DYNAREDIR/unstable
    arch -$ARCH autoreconf -si

    If you want a certain version (e.g. 5.x) , then add --single-branch --branch 5.x to the git clone command.

    • Configure Dynare from the source directory:
    arch -$ARCH ./configure CC=gcc-13 CXX=g++-13 CPPFLAGS=-I$BREWDIR/include LDFLAGS=-L$BREWDIR/lib LEX=$BREWDIR/opt/flex/bin/flex YACC=$BREWDIR/opt/bison/bin/bison --with-slicot=$DYNAREDIR/slicot --with-matlab=/Applications/MATLAB_R2023b.app

    where you need to adapt the path to MATLAB. If you don’t have MATLAB, simply replace --with-matlab=<…> by --disable-matlab. Check the output of the command whether Dynare is configured for building everything except the internal docs of Dynare, Dynare++ and M2HTML.

    • Compile:
    arch -$ARCH make -j$(sysctl -n hw.ncpu)

    If no errors occured, you are done. Dynare is now ready to use.

    • If you additionally want to compile the documentation run:
    arch -$ARCH make pdf html

    Optional: pass the full PATH to MATLAB to run system commands

    If you start MATLAB from a terminal, you will get the PATH inherited from the shell. However, when you click on the application icon in macOS, you are not running at the terminal level: the program is run by launcher, which does not go through a shell login session. In other words, you get the system default PATH which includes /usr/bin:/bin:/usr/sbin:/sbin, but not /usr/local/bin or $HOME/.local/bin. So if you want to use system commands like pdflatex, latexmk or x13as you should either call them by their full path (e.g /Library/TeX/texbin/pdflatex) or append the PATH by running setenv('PATH', [getenv('PATH') ':/usr/local/bin:$HOME/.local/bin:/Library/TeX/texbin']); in your MATLAB command line once, e.g. by adding this to your mod file. Alternatively, you can create a startup.m file or change the system default PATH in the /etc/paths file.