Windows package: bump dependencies

Incidentally, drop workarounds for pkg-config files of HDF5 and MatIO, since
the problems have been fixed upstream.

windows/deps/Makefile

@@ -149,10 +149,6 @@ lib64-msys2: tarballs/mingw-w64-x86_64-boost-$(MINGW64_BOOST_VERSION)-any.pkg.ta
 	rm -rf $@
 	mkdir $@
 	for f in $^; do tar xf $$f --directory $@ $(MSYS2_EXCLUDES); done
-	# Workaround for https://sourceforge.net/p/matio/bugs/42/
-	patch -d lib64-msys2/mingw64/lib/pkgconfig/ < matio.pc.patch
-	# Workaround for https://github.com/msys2/MINGW-packages/issues/18554
-	patch -d lib64-msys2/mingw64/lib/pkgconfig/ < hdf5.pc.patch
 	touch $@
 
 mingw64: tarballs/mingw-w64-x86_64-gcc-$(MINGW64_GCC_VERSION)-any.pkg.tar.zst tarballs/mingw-w64-x86_64-gcc-libs-$(MINGW64_GCC_VERSION)-any.pkg.tar.zst tarballs/mingw-w64-x86_64-gmp-$(MINGW64_GMP_VERSION)-any.pkg.tar.zst tarballs/mingw-w64-x86_64-binutils-$(MINGW64_BINUTILS_VERSION)-any.pkg.tar.zst tarballs/mingw-w64-x86_64-headers-git-$(MINGW64_HEADERS_VERSION)-any.pkg.tar.zst tarballs/mingw-w64-x86_64-crt-git-$(MINGW64_CRT_VERSION)-any.pkg.tar.zst tarballs/mingw-w64-x86_64-winpthreads-git-$(MINGW64_WINPTHREADS_VERSION)-any.pkg.tar.zst tarballs/mingw-w64-x86_64-libwinpthread-git-$(MINGW64_WINPTHREADS_VERSION)-any.pkg.tar.zst tarballs/mingw-w64-x86_64-zlib-$(MINGW64_ZLIB_VERSION)-any.pkg.tar.zst tarballs/mingw-w64-x86_64-zstd-$(MINGW64_ZSTD_VERSION)-any.pkg.tar.zst tarballs/mingw-w64-x86_64-isl-$(MINGW64_ISL_VERSION)-any.pkg.tar.zst tarballs/mingw-w64-x86_64-mpc-$(MINGW64_MPC_VERSION)-any.pkg.tar.zst tarballs/mingw-w64-x86_64-mpfr-$(MINGW64_MPFR_VERSION)-any.pkg.tar.zst tarballs/mingw-w64-x86_64-libiconv-$(MINGW64_LIBICONV_VERSION)-any.pkg.tar.zst tarballs/mingw-w64-x86_64-windows-default-manifest-$(MINGW64_WINDOWS_DEFAULT_MANIFEST_VERSION)-any.pkg.tar.zst

windows/deps/hdf5.pc.patch

---- hdf5.pc.orig	2023-07-27 14:48:13.395698365 +0200
-+++ hdf5.pc	2023-09-19 15:36:49.497960385 +0200
-@@ -10,5 +10,4 @@
- Cflags: -I${includedir}
- Libs: -L${libdir}  -lhdf5
- Requires: 
--Libs.private:  -lhdf5  -lshlwapi -lm -lws2_32 -lwsock32 -l/mingw64/lib/libcurl.dll.a -l/mingw64/lib/libssl.dll.a -l/mingw64/lib/libcrypto.dll.a -l/mingw64/lib/libz.dll.a
--Requires.private: 
-+Requires.private: libcurl zlib

windows/deps/matio.pc.patch

---- matio.pc.orig	2023-07-27 14:48:13.395698365 +0200
-+++ matio.pc	2023-09-19 14:12:05.423816518 +0200
-@@ -6,5 +6,6 @@
- Name: MATIO
- Description: MATIO Library
- Version: 1.5.23
--Libs: -L${libdir} -lmatio -lhdf5 -lz
-+Libs: -L${libdir} -lmatio -lz
-+Requires.private: hdf5
- Cflags: -I${includedir}  

windows/deps/versions.mk

@@ -18,23 +18,21 @@ MATLAB64_VERSION = 20200930
 ## Build dependencies
 
 # pacman -Ss mingw-w64-x86_64-boost
-MINGW64_BOOST_VERSION = 1.81.0-7
+MINGW64_BOOST_VERSION = 1.83.0-1
 
 # pacman -Ss mingw-w64-x86_64-gsl
-MINGW64_GSL_VERSION = 2.7.1-1
+MINGW64_GSL_VERSION = 2.7.1-2
 
 # pacman -Ss mingw-w64-x86_64-matio
-# NB: matio.pc.patch may need to be updated when upgrading
-MINGW64_MATIO_VERSION = 1.5.23-4
+MINGW64_MATIO_VERSION = 1.5.24-1
 
 # Dependency of matio (and of the MinGW compiler)
 # pacman -Ss mingw-w64-x86_64-zlib
-MINGW64_ZLIB_VERSION = 1.2.13-3
+MINGW64_ZLIB_VERSION = 1.3-1
 
 # Dependency of matio
 # pacman -Ss mingw-w64-x86_64-hdf5
-# NB: hdf5.pc.patch may need to be updated when upgrading
-MINGW64_HDF5_VERSION = 1.14.1.2-2
+MINGW64_HDF5_VERSION = 1.14.2-3
 
 # Dependency of HDF5 (provides szip library)
 # pacman -Ss mingw-w64-x86_64-libaec
@@ -42,11 +40,11 @@ MINGW64_LIBAEC_VERSION = 1.0.6-2
 
 # Dependency of HDF5
 # pacman -Ss mingw-w64-x86_64-openssl
-MINGW64_OPENSSL_VERSION = 3.1.1-1
+MINGW64_OPENSSL_VERSION = 3.1.4-1
 
 # Dependency of HDF5
 # pacman -Ss mingw-w64-x86_64-curl
-MINGW64_CURL_VERSION = 8.1.2-1
+MINGW64_CURL_VERSION = 8.4.0-1
 
 # Dependency of curl (and of the MinGW compiler)
 # pacman -Ss mingw-w64-x86_64-zstd
@@ -54,7 +52,7 @@ MINGW64_ZSTD_VERSION = 1.5.5-1
 
 # Dependency of curl
 # pacman -Ss mingw-w64-x86_64-brotli
-MINGW64_BROTLI_VERSION = 1.0.9-5
+MINGW64_BROTLI_VERSION = 1.1.0-1
 
 # Dependency of curl
 # pacman -Ss mingw-w64-x86_64-libpsl
@@ -66,11 +64,11 @@ MINGW64_LIBIDN2_VERSION = 2.3.4-1
 
 # Dependency of curl
 # pacman -Ss mingw-w64-x86_64-libssh2
-MINGW64_LIBSSH2_VERSION = 1.10.0-2
+MINGW64_LIBSSH2_VERSION = 1.11.0-2
 
 # Dependency of curl
 # pacman -Ss mingw-w64-x86_64-nghttp2
-MINGW64_NGHTTP2_VERSION = 1.53.0-1
+MINGW64_NGHTTP2_VERSION = 1.58.0-1
 
 # Dependency of libpsl and libunistring (and of the MinGW compiler)
 # pacman -Ss mingw-w64-x86_64-libiconv
@@ -83,31 +81,31 @@ MINGW64_LIBUNISTRING_VERSION = 1.1-1
 ## MinGW packages for the embedded compiler
 
 # pacman -Ss mingw-w64-x86_64-gcc$
-MINGW64_GCC_VERSION = 13.1.0-6
+MINGW64_GCC_VERSION = 13.2.0-2
 
 # pacman -Ss mingw-w64-x86_64-gmp
-MINGW64_GMP_VERSION = 6.2.1-5
+MINGW64_GMP_VERSION = 6.3.0-2
 
 # pacman -Ss mingw-w64-x86_64-binutils
-MINGW64_BINUTILS_VERSION = 2.40-4
+MINGW64_BINUTILS_VERSION = 2.41-2
 
 # pacman -Ss mingw-w64-x86_64-headers-git
-MINGW64_HEADERS_VERSION = 11.0.0.r18.g9df2e604d-1
+MINGW64_HEADERS_VERSION = 11.0.0.r404.g3a137bd87-1
 
 # pacman -Ss mingw-w64-x86_64-crt-git
-MINGW64_CRT_VERSION = 11.0.0.r18.g9df2e604d-1
+MINGW64_CRT_VERSION = 11.0.0.r404.g3a137bd87-1
 
 # pacman -Ss mingw-w64-x86_64-winpthreads-git
-MINGW64_WINPTHREADS_VERSION = 11.0.0.r18.g9df2e604d-1
+MINGW64_WINPTHREADS_VERSION = 11.0.0.r404.g3a137bd87-1
 
 # pacman -Ss mingw-w64-x86_64-isl
 MINGW64_ISL_VERSION = 0.26-1
 
 # pacman -Ss mingw-w64-x86_64-mpc
-MINGW64_MPC_VERSION = 1.3.1-1
+MINGW64_MPC_VERSION = 1.3.1-2
 
 # pacman -Ss mingw-w64-x86_64-mpfr
-MINGW64_MPFR_VERSION = 4.2.0.p9-1
+MINGW64_MPFR_VERSION = 4.2.1-2
 
 # pacman -Ss mingw-w64-x86_64-windows-default-manifest
 MINGW64_WINDOWS_DEFAULT_MANIFEST_VERSION = 6.4-4